######################################## # Program: needle # Rundate: Thu 11 Feb 2016 07:16:08 # Commandline: needle # -auto # -stdout # -asequence emboss_needle-I20160211-071607-0637-81819120-pg.asequence # -bsequence emboss_needle-I20160211-071607-0637-81819120-pg.bsequence # -datafile EDNAFULL # -gapopen 10.0 # -gapextend 0.5 # -endopen 10.0 # -endextend 0.5 # -aformat3 pair # -snucleotide1 # -snucleotide2 # Align_format: pair # Report_file: stdout ######################################## #======================================= # # Aligned_sequences: 2 # 1: KP113643.1 # 2: 2976 # Matrix: EDNAFULL # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 506 # Identity: 193/506 (38.1%) # Similarity: 194/506 (38.3%) # Gaps: 265/506 (52.4%) # Score: 326.5 # # #======================================= KP113643.1 1 --------------------------------------CATATCCTTAGG 12 || ||| 2976 1 tcTACCGGagGCAAGGCCCCCAGGAaGCAGCTGGCCACCA-------AGG 43 KP113643.1 13 CA-----TAATAGTGAC------ACGCTTGGCGTG--GATGGCGC----- 44 || .||.||||.| ||...|||.||| ||.|.|.| 2976 44 CAGCTCGCAAGAGTGCCCCAGCAACTGGTGGAGTGAAGAAGCCCCATCGT 93 KP113643.1 45 -ACAGGTTGGTGTCCTCGAACAG---------------ACCG-----ACG 73 ||||| |||.|.|||| .||| ||. 2976 94 TACAGG-------CCTGGCACAGTTGCTCTGCGTGAGATCCGTCGTTACC 136 KP113643.1 74 AGATAAGC------CTCGCT-AGCCTCCTGCAGG--GCCATGACGGCAGA 114 |||..||| || ||| |.|| |||.| |||||..| | 2976 137 AGAAGAGCACAGAGCT-GCTGATCC----GCAAGCTGCCATTCC-----A 176 KP113643.1 115 GC-TCTGGAAGCG-CAGATC-----GGTCTTGAA----GTCCTGGGCGAT 153 || ||||| .||| .||||| ||.|||.|| |.||| |||.| 2976 177 GCGTCTGG-TGCGTGAGATCGCCCAGGACTTCAAGACTGACCT--GCGCT 223 KP113643.1 154 TTCACGGACCAGA----CGCTGGAATGGCAGCTTGCGGATCAGGAGCTCG 199 | ||||| .||||..||||| .||| |||||| 2976 224 T-------CCAGAGCTCTGCTGTCATGGC--TTTG-----CAGGAG---- 255 KP113643.1 200 GTGCTCTTCTGGTAACGACGGATCTCACGGAGGGCGAC-GGTTCCGGGCC 248 |.||.|||.| ||.|| | |||| |||| 2976 256 ----------GCTAGCGAGG---CTTAC---------CTGGTT---GGCC 280 KP113643.1 249 TGTAACGATGGGG----CTTCTTG------ACTCCACCGGTGGC----CG 284 ||| .||| || |..|||| | ||||| || || 2976 281 TGT-TCGA---GGACACCAACTTGTGCGCCA-TCCAC-----GCCAAGCG 320 KP113643.1 285 GGGCGCTCTTACGGGCTGCCTTGG----TGGC-CAGCTGTTTCCTGGGGG 329 .|.|.||.||| ||||:..| ||.| .||||||||||.|. 2976 321 TGTCACtATtA-----TGCCyAAGGATATGTCATAGCTGTTTCCdga--- 362 KP113643.1 330 CCTTGCCTCCGGTTGACTTACGGGCTGTCTGCTTGGTACGAGCCATACTG 379 2976 363 -------------------------------------------------- 362 KP113643.1 380 GCCGTC 385 2976 363 ------ 362 #--------------------------------------- #---------------------------------------